Running parts of workflows
SciPipe allows you to, on-demand, run only specific parts of a workflow. This can be useful especially if you are doing modifications far up in an already developed workflow, and want to run only up to a specific process, rather than also running all downstream processes, which might be unnecessary heavy.
This can be done by using the
method. By using this instead of the normal
workflow.Run() method, scipipe
will only run this process and all upstream processes of that one.
See also a simple example of where this is used.
There are a few other variants for specifying parts of workflows (and more might be added in the future), such as specifying individual process names, or providing the process structs themselves. Please refer to the relevant parts of the workflow documentation for more about that.